Labeo rohita (Rohu) Fish Transcriptome Database

The Labeo rohita (Rohu)The Labeo rohita (Rohu) Fish Transcriptome Database has seven different tabs viz. Home, Transcripts, Markers, DEG (CSB), BCGs, miRNA targets and supplements.

Home ->

Transcript ->Blast Search

A blast search tab was generated by using de novo transcriptome assembly of rohu as a database for search.

Transcript -> Expression Profile

This tab provides the information of expression values in the form of FPKM of each transcripts from all sets and also shown blast results.

Transcript--> TF families search

This tab provides the information of transcriptional factors with blast results and each identified transcripts link to AnimalTFDB2.0.

Transcript -> Domain and family search

This tab shows the information of domains and families of Labeo rohita (rohu) de novo transcriptome assembly. Links directly link to EMBL-EBI Interpro database.

Transcript -> Pathways search

This tab provides the information of pathways found in 4 sets of BPGL differential expressed genes and also provides the enzyme name and enzyme ID. Map directly link to KEGG database.

Markers -> SSR

This tab provides the information of identified putative simple sequences repeats and three sets of primers.

Markers -> SNPs

This tab provides the information of identified single nucleotide polymorphism from summer and winter tissue samples against Danio rerio reference genome and de novo transcriptome assembly of Labeo rohita (Rohu).

Markers -> Indels

This tab provides the information of identified Indels from summer and winter tissue samples against Danio rerio reference genome and de novo transcriptome assembly of Labeo rohita (Rohu).

DEG ->

This tab provides the information of differential expressed genes which were found 4 sets of BPGL tissue samples.

BCGs (Biological clock genes) ->

This tab provides the information of identified 32 Biological clock genes in Labeo rohita and similarity of rohu clock gene across different classes of chordates showing extent of conservation

miRNA Target ->

This tab provides the information of miRNA targets which regulate the transcripts of 4 sets of BPGL differential expressed genes.