VigSatDB

VigSatDB can be accessed at: http://webtom.cabgrid.res.in/vigna_ssr/index.php

VigSatDB webserver contains of six tabs viz. Home, Microsatellite, Tools, Polymorphism, Analysis, Tutorial and Team.

Home tab contains the description and importance of VigSatDB with its usage

Analysis tab contained of genome wide analysis of data that are shown in tabular form.

Microsatellite is the main tab with two sub options: Experimentally validated SSR Primer Search and Predicted SSR Primer Search

Experimentally validated SSR Primer Search

This tab provides the detailed list of published experimentally validated marker available in literature.

Predicted SSR Primer Search:

This page provides the multiple options to search in silico predicted microsatellites from three Vigna species. User can search markers chromosome wise as well as whole genome. Moreover, user can search with motif type (mono, di, tri, tetra, penta and hexa), repeat kind (simple or compound) and repeat type (repeat motif).

Advanced Search: This section provides the more customized criteria for preferred results which includes GC Content %, Basepairs, Copy No and Chromosomal Location.

Tool tab provides the SSR search and Blast search options.

SSR search: GUI based interface of SSR markers search.

Blast search: GUI based blast search interface against various genome assemblies of Vigna species.

Polymorphism tab provides the Self design primers and external primers option for searching

Self Design Primer: tab generates the new primers and user can search polymorphic markers against six genomes.

External Primers: work on the already published primers for discovering polymorphic markers