VigSatDB can be accessed at:
http://webtom.cabgrid.res.in/vigna_ssr/index.php VigSatDB webserver contains of
six tabs viz. Home, Microsatellite, Tools, Polymorphism, Analysis, Tutorial and Team. Home tab contains the description and
importance of VigSatDB with its usage
Analysis tab contained of
genome wide analysis of data that are shown in tabular form.
Microsatellite is the main tab with
two sub options: Experimentally validated SSR Primer Search and Predicted SSR
Primer Search Experimentally validated SSR
Primer Search This
tab provides the detailed list of published experimentally validated marker
available in literature.
Predicted SSR Primer Search: This page provides the multiple
options to search in silico predicted microsatellites from three Vigna species. User can search markers
chromosome wise as well as whole genome. Moreover, user can search with motif
type (mono, di, tri, tetra, penta and hexa), repeat kind (simple or compound) and
repeat type (repeat motif). Advanced
Search: This section provides the more customized criteria for preferred
results which includes GC Content %, Basepairs, Copy No and Chromosomal
Location.
Tool tab provides the SSR search and
Blast search options. SSR search: GUI based interface of
SSR markers search.
Blast search: GUI based blast search
interface against various genome assemblies of Vigna species.
Polymorphism tab provides the Self design primers and external primers option for searching Self Design Primer: tab generates the new primers and user can search polymorphic markers against six genomes.
External Primers: work on the already published
primers for discovering polymorphic markers
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